|
3DNA Array Detection
Data References |
| |
|
Microarray Data:
|
| |
Analysis of three different fluorescent dyes for cDNA labeling in microarrays  , 108K |
| |
| FlashTag RNA Labeling Kit Data Set , 448K |
| |
| Ultra-Sensitive Multiplexed Protein Expression Measurements (ELISA, Protein Arrays, and Bead Assay) , 384K |
| |
| A Sensitive Method for MicroRNA Gene Expression Profiling Applied to Prostate Cancer Tissue and Cell Lines LNCaP and PC3 , 830K |
| |
| Labeling submicrogram quantities of total RNA without amplification using the Array 900 Kit. |
| |
| Labeling small degraded RNA samples with the Array 900MPX Kit. |
| |
| Use of DyeSaver Protective Coating to Prevent Fading of Fluorescent Dyes. , 910K |
| |
| Comparison of Differentials Produced by 3DNA and Direct Incorporation Labeling Methods. |
| |
| Comparison of the Genisphere LNA dT blocker to standard oligo dT blocker. |
| |
| Comparison of Effects of Genomic Contamination on 3DNA and Direct Incorporation Labeling methods. |
| |
| Array 900miRNA RT Labeling Kit Data Set , 572K |
| |
|
Research Papers:
|
| |
| Development of a human mitochondrial oligonucleotide microarray (h-MitoArray) and gene expression analysis of fibroblast cell lines from 13 patients with isolated F1Fo ATP synthase deficiency , 800K |
| |
| Gene Expression Profiling in Postmortem Prefrontal Cortex of Major Depressive Disorder , 404K |
| |
| Antidepressant actions of the exercise-regulated gene VGF , 408K |
| |
| Mattie, M.D., Benz, C.C., Bowers, J., Sensinger, K., Wong, L., Scott, G.K., Fedele, V., Ginzinger, D.G., Getts, R.C., Haqq, C.M. Optimized high-throughput microRNA expression profiling provides novel biomarker assessment of clinical prostrate and breast canser biopsies. Molecular Cancer, 5:24, 2006. (Array 900miRNA RT and SenseAMP Plus) |
| |
Collier, R.J., Stiening, C.M., Pollard, B.C., VanBaale, M.J., Baumgard, L.H., Gentry, P.C., and Coussens, P.M. Use of Gene Expression Microarrays for Evaluating Environmental Stress Tolerance at the Cellular Level in Cattle.
J. Anim. Sci., 84:E1-E13, 2006. (DyeSaver 2) |
| |
Green, J., Khabar, K.S.A., Koo, B.C.A., Williams, B.R.G., and Polyak, S.J. Stability of CXCL-8 and Related AU-Rich mRNas in the Context of Hepatitis C Virus Replication In Vitro.
J. Infect. Dis., 193:802-811, 2006. (miRNA) |
| |
Ibañez-Ventoso, C., Yang, M., Guo, S., Robins, H., Padgett, R.W., and Driscoll, M. Modulated microRNA Expression during Adult Lifespan in Caenorthabditis elegans.
Aging Cell, (published online ahead of print 2006). (miRNA Direct) |
| |
Irvin, J.D., and Pugh, B.F. Genome-Wide Transcriptional Dependence on TAF1 Functional Domains.
J. Biol. Chem., 281(10):6404-6412, 2006. (DyeSaver2) |
| |
Olah, J., Orosz, F., Puskas, L.G., Hackler, Jr., L., Horanyi, M., Polgar, L., Hollan, S., and Ovadi, J. Triosephosphate Isomerase Deficiency: Consequences of an Inherited Mutation at mRNA, Protein and Metabolic Levels.
J. Biochem., 392(3):675-683, 2005. (miRNA) |
| |
Scott, G.K., Mattie, M.D., Berger, C.E., Benz, S.C., and Benz, C.C. Rapid Alteration of MicroRNA Levels by Histone Deacetylase Inhibition.
Cancer Research, 66:1277-1281, 2006. (miRNA) |
| |
Adler, A.S., Lin, M., Horlings, H., Nuyten, D.S.A., Van de Vijver, M.J., and Chang, H.Y. Genetic Regulators of Large-Scale Transcriptional Signatures in Cancer.
Nature Genetics, 38:421-430, 2006. (Array 900) |
| |
Alba, R., Payton, P., Fei, Z., McQuinn, R., Debbie, P., Martin, G.B., Tanksley S.D., and Giovannoni, J.J. Transcriptome and Selected Metabolite Analyses Reveal Multiple Points of Ethylene Control During Tomato Fruit Development.
The Plant Cell, 17:2954-2965, 2005. |
| |
Aubin-Horth, N., Landry, C.R.., Letcher, B.H. and Hofmann, H.A. Alternative Life Histories Shape Brain Gene Expression Profiles in Males of the Same Population.
Proc. Biol. Sci., 272(1573):1655-1662, 2005. |
| |
Bourgogne, A., Hilsenbeck, S.G., Dunny, G.M., and Murray, B.E. Comparison of OG1RF and an Isogenic fsrB Deletion Mutant by Transcriptional Analysis: The Fsr System of Enterococcus faecalis is more than the Activator of Gelatinase and Serine Protease.
J. Bacteriol., 188(8):2875-2884, 2006. (Array 900 DNA) |
| |
Boverhof, D.R., Kwekel, J.C., Humes, D.G., Burgoon, L.D., and Zacharewski, T.R. Dioxin Induces an Estrogen-Like, Estrogen Receptor Dependent Gene Expression Response in the Murine Uterus.
Molecular Pharmacology, 69(5):1599-1606, 2006. (Array 900) |
| |
Bredel, M., Bredel, C., Juric, D., Harsh, G.R., Vogel, H., Recht, L.D., and Sikic, B.I. Functional Network Analysis Reveals Extended Gliomagenesis Pathway Maps and Three Novel
MYC-Interacting Genes in Human Gliomas.
Cancer Research, 65:8679-8689, 2005. |
| |
Bredel, M., Bredel, C., Juric, D., Duran, G.E., Yu, R.X., Harsh, G.R., Vogel, H., Recht, L.D., Scheck, A.C., and Sikic, B.I. Tumor Necrosis Factor-alpha-Induced Protein 3 As a Putative Regulator of Nuclear Factor-KB-Mediated Resistance to O6 – Alkylating Agents in Human Glioblastomas.
J. Clinical Oncology, 24(2): 274-287, 2006. |
| |
Buchanan, C.D., Lim, S., Salzman, R.A., Kagiampakis, I., Morishige, D.T., Weers, B.D., Klein, R.R, Pratt, L.H., Cordonnier-Pratt, M.M., Klein, P., and Mullet, J.E. Sorghum Bicolor’s Transcriptome Response to Dehydration, High Salinity and ABA.
Plant Molecular Biology, 58(5):699-720, 2005. |
| |
Bulfone, A., Carotenuto, P., Faedo, A., Aglio, V., Garzia, L., Bello, A.M., Basile, A., Andre, A., Cocchia, M., Guardiola, O., Ballabio, A., Rubenstein, J.L.R., and Zollo, M.
Telencephalic Embryonic Subtractive Sequences: A Unique Collection of Neurodevelopmental Genes.
J. Neurosci., 25(33):7586-7600, 2005. |
| |
Carthew, P., Fletcher, S., White, A., Harries, H., and Weber, K Transcriptomic and Histopathology Changes in Rat Lung After Intratracheal Instillation of Polymers.
Inhalation Toxicology, 18(4):227-245, 2006. |
| |
Cho, K.H., and Caparon, M.G. Patterns of Virulence Gene Expression Differ Between Biofilm and Tissue Communities of Streptococcus pyogenes.
Molecular Microbiology, 57(6):1545-1556, 2005. |
| |
Cohn, J.R. and Martin, G.B. Pseudomonas syringae pv. Tomato Type III Effectors AvrPto and AvrPtoB Promote Ethylene-Dependent Cell Death in Tomato.
The Plant Journal, 44:139, 2005. |
| |
Corbo, J.C., and Cepko, C.L. A Hybrid Photoreceptor Expressing Both Rod and Cone Genes in a Mouse Model of Enhanced S-Cone Syndrome.
PLoS Genet., 1(2):e11, 2005. (Array 900) |
| |
Cottee, P.A., Nisbet, A.J., El-Osta, Y.G., Webster, T.L. and Gasser, R.B. Construction of Gender-Enriched cDNA Archives for Adult Oesophagostomum Dentatum by Suppressive-Subtractive Hybridization and a Microarray Analysis of Expressed Sequence Tags.
Parasitology, 132(5):691-708, 2006. (Array 350RP) |
| |
Derome, N., Duchesne, P., and Bernatchez, L. Parallesism in Gene Transcription Among Sympatric Lake Whitefish (Coregonus Clupeaformis Mitchill) Ecotypes.
Molecular Ecology, 15(5):1239-1249, 2006. (Array 50) |
| |
Fisher, A.L., and Lithgow, G.J. The Nuclear Hormone Receptor DAF-12 has Opposing Effects on Caenorhabditis elegans lifespan and Regulates Genes Repressed in Multiple Long-Lived Worms.
Aging Cell, 5(2):127-138, 2006. (Array 350RP) |
| |
Friedman, S.M., Hossain, M., Hasson, T.H., and Kawamura, A. Gene Expression Profiling of Intrinsic Thermotolerance in Escherichia coli.
Current Microbiology, 52(1):50-54, 2006. (Array 900MPX) |
| |
Ha, E., Han, E., Park, H.J., Kim, H.J., Hong, M.S., Hong, S.J., Yoon, K.S., Kang, I., Cho, Y.H., Chung, J.H., Yim, S.V., and Baik, H.H. Microarray Analysis of Transcription Factor Gene Expression in Melatonin-Treated Human Peripheral Blood Mononuclear Cells.
J. Pin. Res., 40(4):305-311, 2006. (Array 50) |
| |
Haug, K.H., Bogen, I.L., Osmundsen, H., Walaas, I., and Fonnum, F. Effects on Cholinergic Markers in Rat Brain and Blood After Short and Prolonged Administration of Donepezil.
Neurochem. Research, 30(12):1511-1520, 2005. |
| |
Ivashuta, S., Liu, J., Liu, J., Lohar, D.P., Haridas, S., Bucciarelli, B., VandenBosch, K.A., Vance, C.P., Harrison, M.J., and Gantt, J. S. RNA Interference Identifies a Calcium-Dependent Protein Kinase Involved in Medicago truncatula Root Development.
The Plant Cell, 17:2911-2921, 2005. (Array 900) |
| |
Jung, K.H., Han, M.J., Lee, Y.S., Kim, Y.W., Hwang, I., Kim M.J., Kim, Y.K., Nahm, B.H., and An, G. Rice Undeveloped Tapetum1 Is a Major Regulator of Early Tapetum Development.
The Plant Cell, 17:2705-2722, 2005. (Array 50) |
| |
Kálmán, J., Palotáls, A., Juhsáz, A., Rimanóczy, A., Hugyecz, M., Kovács, Z., Galsi, G., Szabó, Z., Pákáski, M., Fehér, L.Z., Janka, Z., and Puskás, L.G., Impact of Venlafaxine on Gene Expression Profile in Lymphocytes of the Elderly with Major Depresson-Evolution of Antidepressants and the Role of the “Neuro-Immune” System.
Neurochemical Research, 30(11):1429-1438, 2005. |
| |
King, K.E., Ponnamperuma, R.M., Gerdes, M.J., Tokino, T., Yamashita, T., Baker, C.C., and Weinberg, W.C. Unique Domain Functions of p63 Isotypes that Differentially Regulate Distinct Aspects of Epidermal Homeostasis.
Carcinogenesis, 27(1):53-63, 2006. (Submicro) |
| |
Kojima, S., Mulholland, D.J., Ettinger, S., Fazli, L., Nelson, C.C., Gleave, M.E. Differential Regulation of IGFBP-3 by the Androgen Receptor in the Lineage-Related Androgen-Dependent LNCaP and Androgen-Independent C4-2 Prostate Cancer Models.
The Prostate, 66(9):971-986, 2006. |
| |
Kwekel, J.C., Burgoon, L.D., Burt, J.W., Harkema, J.R., and Zacharewski, T.R. A Cross-Species Analysis of the Rodent Uterotrophic Program: Elucidation of Conserved Responses and Targets of Estrogen Signaling.
Physiol. Genomics, 23:327-342, 2005. (Array 900) |
| |
Lee, Y.S., Chen, C.H., Chao, A., Chen, E.S., Wei, M.L., Chen, L.K., Yang, K.D., Lin, M.C., Wang, Y.H., Liu, J.W., Eng, H.L., Chiang, P.C., Wu, T.S., Tsao, K.C., Huang, C.G., Tien, Y.J., Wang, T.H., Wang, H.S., and Lee, Y.S. Molecular Signature of Clinical Severity in Recovering Patients with Severe Acute Respiratory Syndrome Coronavirus (SAR-CoV).
BMC Genomics, 6:132, 2005. (350 RP) |
| |
Li, D., Bobrowicz, P., Wilkinson, H.H., and Ebbole, D.J. A Mitogen-Activated Protein Kinase Pathway Essential for Mating and Contributing to Vegetative Growth in Neurospora Crassa.
Genetics, 170(3):1091-1104, 2005. |
| |
Lohar, D.P., Sharopova, N., Endre, G., Peñuela, S., Samac, D., Town, C., Silverstein, K.A.T., and VandenBosch, K.A. Transcript Analysis of Early Nodulation Events in Medicago truncatula.
Plant Physiology, 140:221-234, 2005. (Array 50) |
| |
Macor, P., Mezzanzanica, D., Cossetti, C., Alberti, P., Figini, M., Canevari, S., and Tedesco, F. Complement Activated by Chimeric Anti-Folate Receptor Antibodies is an Efficient Effector System to Control Ovarian Carcinoma.
Cancer Research, 66:3876-3883, 2006. (Submicro) |
| |
Mazurek, N., Sun, Y.J., Price, J.E., Ramdas, L., Schober, W., Nangia-Makker, P., Byrd, J.C., Raz, A., and Bresalier, R.S. Phosphorylation of Galectin-3 Contributes to Malignant Transformation of Human Epithelial Cells via Modulation of Unique Sets of Genes.
Cancer Research, 65:10767-1775, 2005. (Array 350) |
| |
Missall, T.A., Pusateri, M.E., Donlin, M.J., Chambers, K.T., Corbett, J.A., and Lodge, J.K. Posttranslational, Translational, and Transcriptional Responses to Nitric Oxide Stress in Cryptococcus neoformans: Implications for Virulence.
Eukaryotic Cell, 5(3):518-529, 2006. (Array 900) |
| |
Moore, S., Payton, P., Wright, M., Tanksley, S., and Giovannoni, J. Utilization of Tomato Microarrays for Comparative Gene Expression Analysis in the Solanaceae.
J. Experi. Botany, 56(421):2885-2895, 2005. (Array 50) |
| |
Morris, K.A., Snir, E., Pompeia, C., Koroleva, I.V., Kachar, B., Hayashizaki, Y., Carninci, P., Soares, M.B., and Beisel, K.W. Differential Expression of Genes within the Cochlea as Defined by a Custom Mouse Inner Ear Microarray.
J. Assoc. Res. Otholaryngol., 6(1):75-89, 2005. (Array 350 RP) |
| |
Omari, K.M., John, G., Lango, R., and Raine, C.S. Role for CXCR2 and CXCL1 on Glia in Multiple Sclerosis.
Glia, 53(1):24-31, 2005. (Submicro) |
| |
Parche, S., Beleut, M., Rezzonico, E., Jacobs, D., Arigoni, F., Titgemeyer, F., and Jankovic, I. Lactose-over-Glucose Preference in Bifidobacterium longum NCC2705: glcP, Encoding a Glucose Transporter, Is Subject to Lactose Repression.
J. Bacteriol., 188(4):1260-1265, 2006. (Array 350 RP) |
| |
Park, H.J., Yoon, S.H., Han, L.S., Zheng, L.T., Jung, K.H., Uhm, Y.K., Lee, J.H., Jeong, J.S., Joo, W.S., Yim, S.V., Chung, J.H., and Hong, S.P. Amygdalin Inhibits Genes Related to Cell Cycle in SNU-C4 Human Colon Cancer Cells.
World J. Gastronenterol., 11(33):5156-5161, 2005. |
| |
Pocsi, I., Miskei, M., Karanyi, Z., Emri, T., Ayoubi, P., Pusztahelyi, T., Balla, G., and Prade, R.A. Comparison of Gene Expression Signatures of Diamide, H202 and Menadione Exposed Aspergillus nidulans Cultures--Linking Genome-Wide Transcriptional Changes to Cellular Physiology.
BMC Genomics, 6:182, 2005. |
| |
Porter, J.F., Sharma, S., Wilson, D.L., Kappil, M.A., Hart, R.P., and Denhardt, D.T. Tissue Inhibitor of Metalloproteinases-1 Stimulates Gene Expression in MDA-MB-435 Human Breast Cancer Cells by Means of its Ability to Inhibit Metalloproteinases.
Breast Cancer Res. Treat., 94(2):185-193, 2005. |
| |
Rakhade, S.N., Yao, B., Ahmend, S., Asano, E., Beaumont, T.L., Shah, A.K., Draghici, S., Krauss, R., Chugani, H.T., Sood, S., and Loeb, J.A. A Common Pattern of Persistent Gene Activation in Human Neocortical Epileptic Foci.
Annals of Neurology, 58(5):736-747, 2005. |
| |
Riggs, P.K., Angel, J.M., Abel, E.L., and DiGiovanni, J. Differential Gene Expression in Epidermis of Mice Sensitive and Resistant to Phorbol Ester Skin Tumor Promotion.
Molecular Carcinogenesis, 44(2):122-136, 2005. |
| |
Roberge, C., Einum, S., Guderley, H., and Bernatchez, L. Rapid Parallel Evolutionary Changes of Gene Transcription Profiles in Farmed Atlantic Salmon.
Molecular Ecology, 15(1):9-20, 2006. |
| |
Rodriguez-Lanetty, M., Phillips, W.S., and Weis, V.M. Transcriptome Analysis of a Cnidarian-Dinoflagellate Mutualism Reveals Complex Modulation of Host Gene Expression.
BMC Genomics, 7:23, 2006. (Array 50) |
| |
Scholz, B., Kultima, K., Mattsson, A., Axelsson, J., Brunström, B., Halldin, K., Stigson, M., and Dencker, L. Sex-Dependent Gene Expression in Early Brain Development of Chicken Embryos.
BMC Neurosci, 7:12, 2006. |
| |
Senthil, G., Liu, H., Puram, V.G., Clark, A., Stromberg, A., Goodin, M.M. Specific and Common Changes in Nicotiana benthamiana Gene Expression in Response to Infection by Enveloped Viruses.
J. Gen. Virol., 86:2615-2625, 2005. |
| |
Sim, C., Hong, Y.S., Vanlandingham, D.L., Harker, B.W., Christophides, G.K., Kafatos, F.C., Higgs, S., and Collins, F.H. Modulation of Anopheles gambiae Gene Expression in Response to O’Nyong-Nyong Virus Infection.
Insect Molecular Biology, 14(5):475-481, 2005. |
| |
Suh, Y.H., Kim, Y., Bang, J.H., Choi, K.S., Lee, J.W., Kim. W.H., Oh, T.J., An, S. and Jung, M.H. Analysis of Gene Expression Porfiles in Insulin-Sensitive Tissues from Pre-Diabetic and Diabetic Zucker Diabetic Fatty Rats.
J. Molecular Endocrinology, 34:299-315, 2005. |
| |
Tan, F.K., Zhou, X., Mayes, M.D., Gourh, P., Gou, X., Marcum, C., Jin, L., and Arnett, Jr., F.C. Signatures of Differentially Regulated Interferon Gene Expression and Vasculotrophism in the Peripheral Blood Cells of Systemic Sclerosis Patients.
Rheumatology, (published online January 17, 2006). (Array 900) |
| |
Tilton, S.C., Gerwick, L.G., Hendricks, J.D., Rosato, C.S., Corley-Smith, G., Givan, S.A., Bailey, G.S., Bayne, C.J., and Williams, D.E. Use of a Rainbow Trout Oligonucleotide Microarray to Determine Transcriptional Patterns in Aflatoxin B1 –Induced Hepatocellular Carcinoma Compared to Adjacent Liver.
Toxicological Sciences, 88(2):319-330, 2005. (Array 350) |
| |
Tilton, S.C., Givan, S.A., Pereira, C.B., Bailey, G.S., and Williams, D.E. Toxicogenomic profiling of the hepatic tumor promoters indole-3-carbinol, 17beta-estradiol and beta-naphthoflavone in rainbow trout.
Toxicological Sciences, 90(1):61-72, 2006. (Array 350) |
| |
Wang, T.H., Chan, Y.H., Chen, C.W., Kung, W.H., Lee, Y.S., Wang, S.T., Chang, T.C., Wang, H.S. Paclitaxel (Taxol) Upregulates Expression of Functional Interleukin-6 in Human Ovarian Cancer Cells Through Multiple Signaling Pathways.
Oncogene, (published online March 20, 2006). |
| |
Williams, B.L., Yaddanapudi, K., Kirk, C.M., Soman, A., Hornig, M., and Lipkin, W.I. Metallothioneins and Zinc Dysregulation Contribute to Neurodevelopmental Damage in a Model of Perinatal Viral Infection.
Brain Pathol., 16:1-14, 2006. (Array 350)
|
Zhou, X., Tan, F.K., Milewicz, D.M., Guo, X., Bona, C.A., and Arnett, F.C. Autoantibodies to fibrillin-1 activate normal human fibroblasts in culture through the TGF-beta pathway to recapitulate the "scleroderma phenotype".
J. Immunol., 175:4555-4560, 2005. |
| |
Zhou, X., Tan, F.K., Xiong, M., Arnett, F.C., Feghali-Bostwick, C.A. Monozygotic Twins Clinically Discordant for Scleroderma Show Concordance for Fibroblast Gene Expression Profiles.
Arthritis & Rheumatism, 52(10):3305-3314, 2005. (Array 350) |
| |
Al-Mohanna, F., Saleh, S., Parhar, K., and Collison, K. Human Neutrophil Gene Expression Profiling Following Xenogeneic Encounter With Porcine Aortic Endothelial Cells: The Occult Role of Neutrophils in Xenograft Rejection Revealed. Journal of Leukocyte Biology, 78:51-61, 2005. |
| |
Salzman, R.A., Brady, J.A., Finlayson, S.A., Buchanan, C.D., Summer, E.J., Sun, F., Klein, P.E., Klein, R.R., and Pratt, L.H. Transcriptional Profiling of Sorghum Induced by Methyl Jasmonate, Salicylic Acid, and Aminocyclopropane Carboxylic Acid Reveals Cooperative Regulation and Novel Gene Responses. Plant Physiology, 138:352-368, 2005. |
| |
Hofsli, E., Thommesen, L., Yadetie, F., Langaas, M., Kusnierczyk, W., Falkmer, U., Sandvik, A.K., and Laegreid, A. Identification of Novel Growth Factor-Responsive Genes in Neuroendocrine Gastrointestinal Tumor Cells. British Journal of Cancer, 92:1506-1516, 2005. |
| |
Zhang, S.S-M., Xu, X., Li, J., Liu, M-G., Zhao, H., Soares, M.B., Barnstable, C.J., and Fu, X-Y. Comprehensive in Silico Functional Specification of Mouse Retina Transcripts. BMC Genomics, 6:40, 2005. |
| |
Lin, X., Yue, P., Chen, Z., and Schonfeld, G. Hepatic Triglyceride Contents are Genetically Determined in Mice: Results of a Strain Survey. Am J Physiol Gastrointest Liver Physiol, 288:1179-1189, 2005. 4 |
| |
Salmi, M.L., Bushart, T.J., Stout, S.C., and Roux, S.J. Profile and Analysis of Gene Expression Changes during Early Development in Germinating Spores of Ceratopteris Richardii. Plant Physiology, (published online June 17, 2005). |
| |
| Zvara, A., Szekeres, G., Janka, Z., Kelemen, J.Z., Cimmer, C., Santha, M., and Puskas, L.G. Over-Expression of Dopamine D2 Receptor and Inwardly Rectifying Potassium Channel Genes in Drug-Naive Schizophrenic Peripheral Blood Lymphocytes as Potential Diagnostic Markers. Disease Markers, 21(2):61-69, 2005. |
| |
Reisner, K., Asikainen, S., Vertiainen, S., and Wong, G. Developmental and Biological Insights Obtained from Gene Expression of the Nematode Caenorhabditis Elegans. Current Genomics, 6(2):97-107, 2005. |
| |
Uppalapati, S.R., Ayoubi, P., Weng, H., Palmer, D.A., Mitchell, R.E. , Jones, W., and Bender, C.L. The Phytotoxin Coronatine and Methyl Jasmonate Impact multiple Phytohormone Pathways in Tomato. The Plant Journal, 42(2):201-217, 2005. |
| |
Dome, B., Raso, E., Dobos, J., Meszaros, L., Varga, N., Puskas, L.G., Feher, L.Z., Lorincz, T., Ladanyi, A., Trikha, M., Honn, K.V., and Timar, J. Parallel Expression of Integrins in Human Melanoma Cells Upregulates bFGF Expression and Promotes Their Angiogenic Phenotype. International Journal of Cancer, 116(1):27-35, 2005. |
| |
Oh, S-J., Song, S.I., Kim, Y.S., Jang, H-J., Kim, S.Y., Kim, M., Kim, Y-K., Nahm, B.H., and Kim, J-K. Arabidopsis CBF3/DREB1A and ABF3 in Transgenic Rice Increased Tolerance to Abiotic Stress without Stunting Growth. Plant Physiology, 138:341-351, 2005. |
| |
Norsett, K.C., Laegreid, A., Langaas, M., Worlund, S., Fossmark, R., Waldum, H.L., and Sandvik, A.K. Molecular Characterization of Rat Gastric Mucosal Response to Potent Acid Inhibition. Physiol. Genomics, 22:24-32, 2005. |
| |
| Cassat, J.E., Dunman, P.M., McAleese, F., Murphy, E., Projan, S.J., and Smeltzer, M.S. Comparative Genomics of Staphylococcus Aureus Musculoskeletal Isolates. Journal of Bacteriology, 187(2):576-592, 2005. (Array 350 RP used in CGH) |
| |
| De La Fuente, J., Ayoubi, P., Blouin, E.F., Almazan, C., Naranjo, V. and Kocan, K.M. Gene Expression Profiling of Human Promyelocytic Cells in Response to Infection with Anaplasma Phagocytophilum. Cellular Microbiology, 7(4):549-559, 2005. (Array 900) |
| |
| Kielian, T., Esen, N., and Bearden, E.D. Toll-like Receptor 2 (TLR2) is Pivotal for Recognition of S. Aureus Peptidoglycan but not Intact Bacteria by Microglia. Glia. , 49(4):567-76, 2005. (Array 350) |
| |
| Liu, K., Liang, C., Liang, Z., Tus, K., and Wakeland, E.K. Slelab Mediates the Aberrant Activation of STAT3 and Ras-ERK Signaling Pathways in B Lymphocytes. J. Immunol., 174(3):1630-7, 2005. (Submicro) |
| |
| Kim, J.M., Sohn, H.Y., Yoon, S.Y., Oh, J.H., Yang, J.O., Kim, J.H., Song, K.S., Rho, S.M., Yoo, H.S., Kim, Y.S., Kim, JG., and Kim, N.S. Identification of Gastric Cancer-Related Genes Using a cDNA Microarray Containing Novel Expressed Sequence Tags Expressed in Gastric Cancer Cells. Clinical Cancer Res. 11(2 Pt. 1): 473-82, 2005. (Array 50) |
| |
| Dana, A.N., Hong, Y.S., Kern, M.K., Hillenmeyer, M.E., Harker, B.W., Lobo, N.F., Hogan, J.R., Romans, P., and Collins, F.H. Gene Expression Patterns Associated with Blood-Feeding in the Malaria Mosquito Anopheles Gambiae. BMC Genomics , 6(5), 2005. (Array 50) |
| |
| Ohsugi, M., Cras-Meneur, C., Zhou, Y., Bernal-Mizrachi, E., Johnson, J.D., Luciani, D.S., Polonsky, K.S. and Permutt, M.A. Reduced Expression of the Insulin Receptor in Mouse Insulinoma (MIN6) Cells Reveals Multiple Roles of Insulin Signaling in Gene Expression, Proliferation, Insulin Content, and Secretion. J. Biol. Chem., 280(6):4992-5003, 2005. (Array 50) |
| |
| Shaked, I., Tchoresh, D., Gersner, R., Meiri, G., Mordechai, S., Xiao, X., Hart, R.P., and Schwartz, M. Protective Autoimmunity: Interferon-Gamma Enables Microglia to Remove Glutamate Without Evoking Inflammatory Mediators. J. Neurochem. 92(5):997-1009, 2005. (Unspecified) |
| |
| Rerngsamran, P., Murphy, M.B., Doyle, S.A., and Ebbole, D.J. Fluffy, the Major Regulator of Conidiation in Neurospora Crassa, Directly Activates a Developmentally Regulated Hydrophobin Gene. Molecular Microbiology, 56(1):282-297, 2005. (Submicro EX) |
| |
| Medina-Gundrum, L., Cerna, C., Gomez, L., and Izbicka, E., Investigation of HMN-176 Anticancer Activity in Human Tumor Specimens In Vitro and the Effects of HMN-176 on Differential Gene Expression. Investigational New Drugs, 23(1):52247-52254, 2004. |
| |
| Von Schalburg K.R., Rise M.L., Brown G.D., Davidson W.S., Koop B.F. A Comprehensive Survey of the Genes Involved in Maturation and Development of the Rainbow Trout Ovary. Biol. Reprod., 72:687-699, 2005 |
| |
Pisarchik, A., Wortsman, J., and Slominski, A. A Novel Microarray to Evaluate Stress-Related Genes in Skin: Effect of Ultraviolet Light Radiation.
Gene, 341:199-207, 2004. (Array 50) |
| |
| Kim, S.W., Choi, S.C., Choi, E.Y., Kim, K.S., Oh, J.M., Lee, H.J., Oh, H.M., Kim, S., Oh, B.S., Kimm, K.C., Lee, M.H., Seo, G.S., Kim, T.H., Oh, H.C., Woo, W.H., Kim, Y.S., Pae, H.O., Park, D.S., Chung, H.T., and Jun, C.D. Catalposide, a compound isolated from catalpa ovata, attenuates induction of intestinal epithelial proinflammatory gene expression and reduces the severity of trinitrobenzene sulfonic Acid-induced colitis in mice. Inflamm. Bowel Dis. 10(5):564-72, 2004. (Unspecified) |
| |
| Shin, D.M., Ahn, J.I., Lee, K.H., and Lee, Y.S. Ascorbic Acid Responsive Genes During Neuronal Differentiation of Embryonic Stem Cells. Neuroreport. 15(12):1959-63, 2004. (Array 350RP) |
| |
| Kielan, T, Bearden, E.D., Baldwin, A.C., Esen, N. IL-1 and TNF-Alpha Play a Role in the Host Immune Response in a Mouse Model of Staphylococcus Aureus-Induced Experimental Brain Abscess. J. Neuropathol. Exp. Neurol. , 63(4):381-96, 2004. (Array 350) |
| |
| Bailey, M.J., Beremand, P.D., Hammer, R., Reidel, E., Thomas, T., and Cassone, V.M. Transcriptional Profiling of Circadian Patterns of mRNA Expression in the Chicken Retina. J. Biol. Chem., 279:52247-52254, 2004. |
| |
| Revollo, J.R., Grimm, A.A., and Imai, S. The NAD Biosynthesis Pathway Mediated by Nicotinamide Phosphoribosyltransferase Regulates Sir2 Activity in Mammalian Cells. J. Biol. Chem., 279:50754-50763, 2004. |
| |
| Buhman, K.K., Wang, L.C., Tang, Y., Swietlicki, E.A., Kennedy, S., Xie, Y., Liu, Z-Y., Burkly, L.C., Levin, M.S., Rubin, D.C., and Davidson, N.O. Inhibition of Hedgehog Signaling Protects Adult Mice From Diet-Induced Weight Gain. J. Nutr., 134:2979-2984, 2004. |
| |
| Faedo, A., Quinn, J.C., Stoney, P., Long, J.E., Dye, C., Zollo, M., Rubenstein, J.L.R., Price, D.J. and Bulfone, A. Identification and Characterization of a Novel Transcript Down-Regulated in D1x1/D1X2 and Up-Regulated in Pax6 Mutant Telencephalon. Development Dynamics, 231(3):614-620, 2004 |
| |
| Yu J., He S., Friedman J.S., Akimoto M., Ghosh D., Mears A.J., Hicks D., Swaroop A. Altered Expression of Genes of the Bmp/Smad and Wnt/Calcium Signaling Pathways in the Cone-only Nrl Mouse Retina, Revealed by Gene Profiling Using Custom cDNA Microarrays. J. Boil. Chem., 279(40):42211-42220, 2004 |
| |
| Liao Y., Shikapwashya O.N., Shteyer E., Dieckgraefe B.K., Hruz P.W., Rudnick D.A. Delayed Hepatocellular Mitotic Progression and Impaired Liver Regeneration in Early Growth Response-1-Deficient Mice. J. Biol. Chem., 279(41):43107-43116, 2004 |
| |
| De Cecco L., Marchionni L., Gariboldi M., Reid J.F., Lagonigro M.S., Caramuta S., Ferrario C., Bussani E., Mezzanzanica D., Turatti F., Delia D., Daidone M.G., Oggionni M., Bertuletti N., Ditto A., Raspagliesi F., Pilotti S., Pierotti M.A., Canevari S., Schneider C. Gene Expression Profiling of Advanced Ovarian Cancer: Characterization of a Molecular Signature Involving Fibroblast Growth Factor 2. Oncogene, 23(49):8171-83, 2004 |
| |
| Zhang, X., Fowler, S.G., Cheng, H., Lou, Y., Rhee, S.Y., Stockinger, E.J. and Thomashow, M.F. Freezing-sensitive Tomato has a Functional CBF Cold Response Pathway, but a CBF Regulon that Differs from that of Freezing-tolerant Arabidopsis. The Plant Journal, 39(6):905-919, 2004 |
| |
| Rise M.L., von Schalburg K.R., Brown G.D., Mawer M.A., Devlin R.H., Kuipers N., Busby M., Beetz-Sargent M., Alberto R., Gibbs A.R., Hunt P., Shukin R., Zeznik J.A., Nelson C., Jones S.R., Smailus D.E., Jones S.J., Schein J.E., Marra M.A., Butterfield Y.S., Stott J.M., Ng S.H., Davidson W.S., Koop B.F. Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics. Genome Reasearch, 14:478-490, 2004 |
| |
| Cui, X.L., Soteropoulos, P., Tolias, P. and Ferraris, R.P. Fructose-Responsive Genes in the Small Intestine of Neonatal Rats. Physiol. Genomics, 18(2):206-17, 2004. |
| |
| Zhang, Z. and Stanley, SL., Jr. Stereotypic and Specific Elements of the Human Colonic Response to Entamoeba Histolytica and Shigella Flexneri. Cell Microbiol., 6:535-54, 2004. |
| |
| Gurok, U., Steinhoff, C., Lipkowitz, B., Ropers, H.-H., Scharff, C. and Nuber, U.A. Gene Expression Changes in the Course of Neural Progenitor Cell Differentiation. J. Neurosci., 24(26);5982-6002, 2004. |
| |
| Golden, T.R. and Melov, S. Microarray Analysis of Gene Expression with Age in Individual Nematodes. Aging Cell, 2004 Apr 29 (Epub ahead of print). |
| |
| Rawls, J. F., Buck, S. and Gordon, J.I. Gnotobiotic Zebrafish Reveal Evolutionarily Conserved Responses to the Gut Microbiota. PNAS, 101(13):4596-4601, 2004 |
| |
| Hu, R., Hebbar, V., Kim, B.R., Chen, C., Winnik, B., Buckley, B., Soteropoulos, P.,Tolias P., Hart, R.P., and Kong, A.N. In Vivo Pharmacokinetics and Regulation of Gene Expression Profiles by Isothiocyanate Sulforaphane in the Rat. J. Pharmacol. Exp. Ther., 2004 Feb 26 (Epub ahead of print). |
| |
| Ohshima, K., Karube, K., Kawano, R., Tsuchiya, T., Suefuji, H., Yamaguchi, T., Suzumiya, J., and Kikuchi, M. Classification of Distinct Subtypes of Peripheral T-cell Lymphoma Unspecified, Identified by Chemokine and Chemokine Receptor Expression: Analysis of Prognosis. International Journal of Oncology, 25:605-613, 2004. |
| |
| Castro-Obregón, S., Rao, R.V., Del Rio, G., Chen, S.F., Poksay, K.S., Rabizadeh, S., Vesce S., Zhang, X.-K., Swanson, R.A. and Bredesen, D.E. Alternative, Nonapoptotic Programmed Cell Death: Mediation by Arrestin 2, ERK2, and Nur77. J. Biol. Chem., 279(17):17543-17553, 2004. |
| |
| Moon, J., Salzman, R.A., Ahn, J.-E., Koiwa, H. and Zhu-Salzman, K. Transcriptional Regulation in Cowpea Bruchid Guts during Adaptation to a Plant Defence Protease Inhibitor. Insect Molecular Biology, 13(3):283-291, 2004. |
| |
| Almstrup, K., Nielsen, J.E., Hansen, M.A., Tanaka, M., Skakkebaek, N.E., and Leffe, H. Analysis of Cell-Type-Specific Gene Expression During Mouse Spermatogenesis. Biol. Reprod., 2004 Feb 11 (Epub ahead of print). |
| |
| Ohshima, K., Karube, K., Hamasaki, M., Makimoto, Y., Fujii, A., Kawano, R., Tuiya, T., Yamaguchi, T., Suzumiya, J. and Kikuchi, M. Apoptosis- and Cell Cycle-Associated Gene Expression Profiling of Hystiocytic Necrotising Lymphadenitis. European Journal of Heaematology, 72(5):322-329, 2004. |
| |
| Pan, J.Z., Jörnsten, R. and Hart, R.P. Screening Anti-Inflammatory Compounds in Injured Spinal Cord with Microarrays: A Comparison of Bioinformatics Analysis Approaches. Physiol. Genomics, 17:201-214, 2004. |
| |
| Choi, E.-Y., Kim, E.-C., Oh, K.-M., Kim, S., Lee, H.-J., Cho, E.-Y., Yoon, K.-H., Kim, E.-A., Han, W.-C., Choi, S.-C., Hwang, J.-Y., Park, C., Oh, B.-S, Kim, Y., Kimm, K.-C., Park, K.-I., Chung, H.-T. and Jun, C.-D. Iron Chelator Triggers Inflammatory Signals in Human Intestinal Epithelial Cells: Involvement of p38 and Extracellular Signal-Regulated Kinase Signaling Pathways. J. Immunol., 172:7069-7077, 2004. |
| |
| Zhu-Salzman K., Salzman R.A., Ahn J.E., Koiwa H. Transcriptional Regulation of Sorghum Defense Determinants Against a Phloem-Feeding Aphid. Plant Physiol.,134(1):420-31, 2004. |
| |
| Norsett, K.G., Laegreid, A., Midelfart, H., Yadetie, F., Erlandsen, S.E., Falkmer, S., Gronbech, J.E., Waldum, H.L., Komorowski, J., and Sandvik, A.K. Gene Expression Based Classification of Gastric Carcinoma. Cancer Letters, 210:227-237, 2004. |
| |
| Chen, J., Newton S.S., Zeng, L., Adams, D.H., Dow, A.L., Madsen, T.M., Nestler, E.J. and Duman, R.S. Downregulation of the CCAAT-Enhancer Binding Protein β in ΔFosB Transgenic Mice and by Electroconvulsive Seizures. Neuropsychopharmacology, 29:23-31, 2004. |
| |
| Bailey, M.J., Beremand, P.D., Hammer, R., Bell-Pederson, D., Thomas, T.L. and Cassone, V.W. Transcriptional Profiling of the Chick Pineal Gland, a Photoreceptive Circadian Oscillator and Pacemaker. Molecular Endocrinology, 17:2084-2095, 2003. |
| |
| Ohshima, K., Karube, K., Hamasaki, M., Suefuji, H., Tutiya, T., Yamaguchi, T., Suzumiya, J. and Kilkuchi, M. Imbalances of Chemokines, Chemokine Receptors and Cytokines in Hodgkin Lymphoma: Classical Hodgkin Lymphoma vs. Hodgkin-like ATLL. International Journal of Cancer, 106(5):706-712, 2003. |
| |
| Yadetie, F., Laegried, A., Bakke, I., Kusnierczyk, W., Komorowski, J., Waldum, H.I., and Sandvik, A. Liver Gene Expression in Rats in Response to the Perixisome Proliferator-Activated Receptor-a Agonist Ciprofibrate. Physiol. Genomics, 15:9-19, 2003. |
| |
| Takano, Y., Choi, W., Mitchell, T.K., Okuno, T., and Dean, R.A. Large Scale Parallel Analysis of Gene Expression During Infection-Related Morphogenesis of Magnaporthe Grisea. Molecular Plant Pathology, 4(5):337, 2003. |
| |
| Summan, M., McKinstry, M., Warren, G.L., Hulderman, T., Mishra, D., Brumbaugh, K., Luster, M.L. and Simeonova, P.P. Inflammatory Mediators and Skeletal Muscle Injury: A DNA Microarray Analysis. J. Interferon & Cytokine Research, 23:237-245, 2003. |
| |
| Carmel, J.B., Kakinohana, O., Mestril, R., Young, W., Marsala, M. and Hart, R.P. Mediators of Ischemic Preconditioning Identified By Microarray Analysis of Rat Spinal Cord, Experimental Neurology, 185: 81-96, 2003. |
| |
| Newton, S.S., Collier, E.F., Hunsberger, J., Adams, D., Terwilliger, R., Selvanayagam, E. and Duman, R.S. Gene Profile of Electroconvulsive Seizures: Indication of Neurotrophic and Angiogenic Factors, J. Neurosci., 23(34):10841-10851, 2003. |
| |
| OBrian, G.R., Fakhoury, A.M., and Payne, G.A. Identification of Genes Differentially Expressed During Aflatokin Biosynthesis in Aspergillus Flavus and Aspergillus Parasiticus. Fungal Genet Biol., 39(2):118-27, 2003. |
| |
| Ohshima, K., Hamasaki, M., Makimoto, Y., Yoneda, S., Fujii, A., Takamatsu, Y., Nakashima, M., Watanabe, T., Kawahara, K., Kikuchi, M., and Shirakusa, T. Differential Chemokine, Chemokine Receptor, Cytokine and Cytokine Receptor Expression in Pulmonary Adenocarcinoma: Diffuse Down-regulation is Associated with Immune Evasion and Brain Metastasis. International Journal of Oncology, 23:965-973, 2003. |
| |
| Lee, J.-Y. and Lee, D.-H. Use of Serial Analysis of Gene Expression Technology to Reveal Changes in Gene Expression in Arabidopsis Pollen Undergoing Cold Stress, Plant Physio., 132:517-529, 2003. |
| |
| Shankar, S.L., O’Guin, K., Cammer, M., McMorris, F.A., Stitt, T.N., Basch, R.S., Varnum, B., and Shafit-Zagardo, B. The Growth Arrest-Specific Gene Product Gas6 Promotes the Survival of Human Oligodendrocytes via a Phosphatidylinositol 3-Kinase-Dependent Pathway, J. Neurosci., 23(10):4208-4218, 2003. |
| |
| Anders, R.A., Yerian, L.M., Tretiakova, M., Davison, J.M., Quigg, R.J., Domer, P.H., Hoberg, J. and Hart, J. cDNA Microarray Analysis of Macroregenerative and Dysplastic Nodules in End-Stage Hepatitis C Virus-Induced Cirrhosis, Am. J. Pathol., 162: 991-1000, 2003. |
| |
| Chiang, M. and Melton, D. Single-Cell Transcript Analysis of Pancreas Development, Developmental Cell, 4:383-393, 2003. |
| |
| Ng, A., Tang, J.P., Goh, C.H.K. and Hui, K.M. Regulation of the H19 Imprinting Gene Expression in Human Nasopharyngeal Carcinoma by Methylation. International Journal of Cancer, 104(2):179-187, 2003. |
| |
| Cheung, V.G., Conlin, L.K., Weber, T.M., Arcaro, M., Jen, K., Morley, M. and Spielman, R.S. Natural Variation in Human Gene Expression Assessed in Lymphoblastoid Cells, Nature Genetics, 33:422-425, 2003. |
| |
| Han Z., Truong Q.A., Park S., Breslow J.L. Two Hsp70 Family Members Expressed in Atherosclerotic Lesions. PNAS, 100(3):1256-1261, 2003 |
| |
| Yoshida, S., Yashar, B.M., Hiriyanna, S. and Swaroop, A. Microarray Analysis of Gene Expression in the Aging Human Retina. Investigative Opthalmology & Visual Science, 43(8):2554-2560, 2002. |
| |
| John, G.R., Shankar, S.L., Shafit-Zagardo, B., Massini, A., Lee, S.C., Raine, C.S., Brosnan, C.F. Multiple Sclerosis: Re-expression of a Developmental Pathway that Restricts Oligodendrocyte Maturation, Nature Medicine, 8:1115-1121, 2002. |
| |
| Bourdon, V., Naef, F., Rao, P.H., Reuter, V., Mok, S.C., Bosl, G.J., Koul, S., Murty, V.V.S., Kucherlapati, S., and Chaganti, R.S.K. Genomic and Expression Analysis of the 12p11-p12 Amplicon Using EST Arrays Identifies Two Novel Amplified and Overexpressed Genes. Cancer Research, 62(21):6218-6223, 2002. |
| |
| Watts, J.A., Morley, M., Burdick, J.T., Fiori, J.L., Ewens, W.J., Spielman, R.S., and Cheung, V.G. Gene Expression Phenotype in Heterozygous Carriers of Ataxia Telangiectasia. Am. J. Hum. Genet, 71:791-800, 2002. |
| |
| Chauhan, B.K., Reed, N.A., Yang, Y., Cermak, L., Reneker, L., Duncan, M.K. and Cvekl, A. A Comparative cDNA Microarray Analysis Reveals a Spectrum of Genes Regulated by Pax6 in Mouse Lens. Genes to Cells, 7:1267-1283, 2002. |
| |
| Lewis, Z.A., Correa, A., Schwerdtfeger, C., Link, K.L., Xie, X., Gomer, R.H., Thomas, T., Ebbole, D.J., and Bell-Pedersen, D. Overexpression of White Collar-1 (WC-1) Activates Circadian Clock-Associated Genes, but is not Sufficient to Induce Most Light-Regulated Gene Expression in Neurospora Crassa. Molecular Microbiology, 45(4):917, 2002. |
| |
| Yoshida, T., Kurella, M., Beato, F., Min, H., Ingelfinger, J.R., Stears, R.L., Swinford, R.D., Gullans, S.R. and Tang, S. Monitoring Changes in Gene Expression in Renal Ischemia-Reperfusion in the Rat. Kidney International, 61(5), 1646-1654, 2002. |
| |
| Jones, P.G., Allaway, D., Gilmour, D.M., Harris, C., Rankin, D., Retzel, E.R. and Jones, C.A. Gene Discovery and Microarray Analysis of Cacao (Therobroma Cacao L.) Varieties. Planta, 216:255-264, 2002. |
| |
| Belbin, T.J., Singh, B., Barber, I., Socci, N., Wenig, B., Smith, R., Prystowsky, M.B. and Childs, G. Molecular Classification of Head and Neck Squamous Cell Carcinoma Using cDNA Microarrays. Cancer Research, 62:1184-1190, 2002. |
| |
| Lee, C.S., Perreault, N., Brestelli, J.E. and Kaestner, K.H. Neurogenin 3 is Essential for the Proper Specification of Gastric Enteroendocrine Cells and the Maintenance of Gastric Epithelial Cell Identity. Genes & Development, 16:1488-1497, 2002. |
| |
| Scearce, L.M., Brestelli, J.E., McWeeney, S.K., Lee, C.S., Mazzarelli, J., Pinney, D.F., Pizarro, A., Stoeckert, C.J., Clifon, S.W., Permutt, M.A., Brown, J., Melton, D.A., and Kaestner, K.H. Functional Genomics of the Endocrine Pancreas, Diabetes, 51:1997-2004, 2002 |
| |
| Ruuska, S. A., Girke, T., Benning, C., and Ohlrogge, J. B. Contrapuntal Networks of Gene Expression during Arabidopsis Seed Filling. Plant Cell, 14:1191-1206, 2002. |
| |
| Chauhan, B.K., Reed, N.A., Zhang, W., Duncan, M.K., Kilimann, M., Cvekl, A. Identification of Genes Downstream of Pax6 in the Mouse Lens using cDNA Microarrays. J Biol. Chem., 227:11539-11548, 2002. |
| |
| Heath, L.S., Ramakrishnan, N., Sederoff, R.R., Whetten, R.W., Chevone, B., Struble, C.A., Jouenne, V.Y., Chen, D., Van Zyl, L., and Grene, R. Studying the Functional Genomics of Stress Responses in Loblolly Pine with the Expresso Microarray Experiment Management System. Comparative and Functional Genomics, 3(3):226-243, 2002. |
| |
| Cheng, Q., Lau, W.M., Tay, S.K., Chew, S.H., Ho, T.H. and Hui, K.M. Identification and Characterization of Genes Involved in the Carcinogenesis of Human Squamous Cell Cervical Carcinoma. International Journal of Cancer, 98(3):419-426, 2002. |
| |
| Mu, X., Zhao, S., Pershad, R., Hsieh, T.F., Scarpa, A., Wang, S.W., White, R.A., Beremand, P.D., Thomas, T.L., Gan, L., Klein, W.H. Gene Expression in the Developing Mouse Retina by EST Sequencing and Microarray Analysis. Nucl. Acids Res., 29(24):4983-4993, 2001. |
| |
| |
|
|
Methods Papers: |
| |
| Hayes, K.R., Vollrath, A.L., Zastrow, G.M., McMillan, B.J., Craven, M., Jovanovich, S., Rank, D.R., Penn, S., Walisser, J.A., Reddy, J.K., Thomas, R.S., and Bradfield, C.A. EDGE: A Centralized Resource for the Comparison, Analysis and Distribution of Toxicogenomic Information. Mol. Pharmacol. 67(4):1360-8, 2005. (Array 50) |
| |
| Deng, C., and Wang, D. Neutral Network Normalization (N3) to Uncover the Differential Signal of cDNA Microarrays. The Journal of VLSI Signal Processing, 38(3):227-236, 2004. |
| |
| Asyali, M.H., Shoukri, M.M., Demirkaya, O. and Khabar, K.S.A. Assessment of Reliability of Microarray Data and Estimation of Signal Thresholds using Mixture Modeling. Nucleic Acids Research, 32(8):2323-2335, 2004. |
| |
| Huang, R., Lin, Y., Shi, Q., Flowers, L., Ramachandran, S., Horowitz, I.R., Parthasarathy, S. and Huang, R.P. Enhanced Protein Profiling Arrays with ELISA-Based Amplification for High-Thoroughput Molecular Changes of Tumor Patients’ Plasma. Clinical Cancer Research, 10:598-609, 2004. |
| |
| Yao, B., Rakhade, S.N., Li, Q., Ahmed, S., Krauss, R., Draghici, S., Loeb, J.A. Accuracy of cDNA Microarray Methods to Detect Small Gene Expression Changes Induced by Neuregulin on Breast Epithelial Cells. BMC Bioinformatics, 5:99, 2004. |
| |
| Ray, A., Macwana, S., Ayoubi, P., Hall, L.T., Prade, R. and Mort, A.J. Negative Subtraction Hybridization: An Efficient Method to Isolate Large Numbers of Condition-Specific cDNAs. BMC Genomics, 5:22, 2004. |
| |
| Rouse, R.J.D., Espinoza, C.R., Niedner, R. H., and Hardiman, G. Development of a Microarray Assay that Measures Hybridization Stoichiometry in Moles. BioTechniques, 36:464-470, 2004. |
| |
| Zhang, L., Srinivasan, U., Marrs, C.F., Ghosh, D., Gilsdorf, J.R., and Foxman, B. Library on a Slide for Bacterial Comparative Genomics. BMC Microbiology, 4:12, 2004. |
| |
| Romualdi, C., Trevisan, S., Celegato, B., Costa, G., and Lanfranchi, G. Improved Detection of Differentially Expressed Genes in Microarray Experiments through Multiple Scanning and Image Integration. Nucleic Acids Research, 31(23):e149, 2003. |
| |
| Badiee, A., Eiken, H.G., Steen, V.M., and Løvlie, R. Evaluation of Five Different cDNA Labeling Methods for Microarrays Using Spike Controls. BMC Biotechnology, 3:23, 2003. |
| |
| Livesey, F.J. Strategies for Microarray Analysis of Limiting Amounts of RNA. Briefing in Functional Genomics and Protemocs, 2(1):31-36(6), 2003. |
| |
| Manduchi, E., Scearce, L.M., Brestelli, J.E., Grant, G.R., Kaestner, K.H., and Stoeckert Jr., C.J. Comparison of Different Labeling Methods for Two-Channel High-Density Microarray Experiments. Physiol. Genomics., 10:169-179, 2002. |
| |
| Yu, J., Othman, M.I., Farjo, R., Zareparsi, S., MacNee, S.P., Yoshida, S., Swaroop, A. Evaluation and Optimization of Procedures for Target Labeling and Hybridization of cDNA Microarrays. Mol. Vis., 2002. |
| |
| Moore, S., Vrebalov, J., Payton, P., and Giovannoni, J. Use of Genomics Tools to Isolate Key Ripening Genes and Analyze Fruit Maturation in Tomato. J. Exp. Botany, 53: 2033-2030, 2002. |
| |
| Ruuska, S.A. and Ohlrogge, J.B. Protocol for Small-Scale RNA Isolation and Transcription Profiling of Developing Arabidopsis Seeds. BioTechniques, 31(4):752-758, 2001. |
| |
| Stears, R.L., Getts, R.C., Gullans, S.R. A Novel, Sensitive Detection System for High-Density Microarray Using Dendrimer Technology, Physiol. Genomics, 3:93-99, 2000. |
| |
|
|
